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Director's cut of episode 12 included with the BD/DVD box release. Contains about 15 minutes of new content.

Continuation of Gatchaman Crowds series.

The story is set in Japan in the early summer of 2015. 180,000 people live in Tachikawa City, the “second metropolis” of the Tokyo area. Among them are “Gatchaman”—warriors who fight in special reinforced suits powered by “NOTE,” the manifestation of special spiritual powers in living beings.  A council has scouted a group of individuals with latent powers to protect Earth from alien criminals. In recent years, the council has assigned Gatchaman warriors to deal with the mysterious entity known as “MESS.”

Hajime Ichinose's ordinary life is in for a change when a transcendent being named J.J Robinson hands her a small book called NOTE—a device which transforms her into one of the Gatchaman, the legendary protectors of Tachikawa City. Stressing that the existence of their group must remain a secret, fellow Gatchaman Sugane Tachibana takes Hajime to their base of operations, where Paiman, the panda-like alien leader of the Gatchaman, reveals their purpose: to eliminate aliens that pose a danger to humanity. These existential threats, called MESS, are becoming increasingly dangerous, destroying everything they touch. Now it's up to the Gatchaman and their new recruit to stop them before the world is engulfed in chaos.

In the year 2066, the Republic of Hontworl, a charter member of the United Nations, leaves the organization without explaining its motives. This causes an outrage within the U.N. and places the security of the world on edge. Soon after this incident, Myori, the capital of the Republic of Triad, is attacked by a bird-like, flying fortress known as the Turtle King. The International Science Organization, which is headed by Dr. Kouzaburou Nanbu, is tasked to deal with this mysterious enemy. At the same time, the leading scientists of the ISO are disappearing. The five members of the Science Ninja Team, the Gatchaman warriors, are called upon to get to the bottom of things. It's been years since the team has fought Berg Katze and the infamous Galactor organization. Will Ken, also known as the Eagle, still be able to lead his team to victory against this supreme force of evil?