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Shinji Ikari is left emotionally comatose after the death of a dear friend. With his son mentally unable to pilot the humanoid robot Evangelion Unit-01, Gendou Ikari's NERV races against the shadow organization SEELE to see who can enact their ultimate plan first. SEELE desires to create a godlike being by fusing their own souls into an Evangelion unit, while Gendou wishes to revert all of humanity into one primordial being so that he can be reunited with Yui, his deceased wife. SEELE unleashes its military forces in a lethal invasion of NERV headquarters. As SEELE's forces cut down NERV's scientists and security personnel, Asuka Langley Souryuu pilots Evangelion Unit-02 in a desperate last stand against SEELE's heaviest weaponry. The battle rages on, and a depressed Shinji hides deep within NERV's headquarters. With the fate of the world resting in Shinji's hands, Captain Misato Katsuragi hunts for the teenage boy as society crumbles around them.

Originally a collection of clips from the Neon Genesis Evangelion TV series, Death was created as a precursor to the re-worked ending of the series. Rebirth was intended as that reworked ending but after production overruns became only the first half of the first episode of The End of Evangelion, with some minor differences. Over time, two newer director's cuts of Death were produced, each including new footage not seen in the series - these were called Death (True) and finally Death (True)^2. Note that despite containing clips from the series, Death (True)^2 & Rebirth should be seen after the series itself to be fully understood.

In the year 2015, more than a decade has passed since the catastrophic event known as Second Impact befell mankind. During this time of recovery, a select few learned of beings known as the Angels—colossal malevolent entities with the intention of triggering the Third Impact and wiping out the rest of humanity. Called into the city of Tokyo-3 by his father Gendou Ikari, teenager Shinji is thrust headlong into humanity's struggle. Separated from Gendou since the death of his mother, Shinji presumes that his father wishes to repair their shattered familial bonds; instead, he discovers that he was brought to pilot a giant machine capable of fighting the Angels, Evangelion Unit-01. Forced to battle against wave after wave of mankind's greatest threat, the young boy finds himself caught in the middle of a plan that could affect the future of humanity forever.

At the age of 14 Shinji Ikari is summoned by his father to the city of Neo Tokyo-3 after several years of separation. There he unwillingly accepts the task of becoming the pilot of a giant robot by the name EVA01 and protect the world from the enigmatic invaders known as “angels.” Even though he repeatedly questions why he has accepted this mission from his estranged and cold father, his doing so helps him to gradually accept himself. However, why exactly are the angels attacking and what are his father’s true intentions are yet to be unraveled.

In the year 2015, the world stands on the brink of destruction. Humanity's last hope lies in the hands of Nerv, a special agency under the United Nations, and their Evangelions, giant machines capable of defeating the Angels who herald Earth's ruin. Gendou Ikari, head of the organization, seeks compatible pilots who can synchronize with the Evangelions and realize their true potential. Aiding in this defensive endeavor are talented personnel Misato Katsuragi, Head of Tactical Operations, and Ritsuko Akagi, Chief Scientist. Face to face with his father for the first time in years, 14-year-old Shinji Ikari's average life is irreversibly changed when he is whisked away into the depths of Nerv, and into a harrowing new destiny—he must become the pilot of Evangelion Unit-01 with the fate of mankind on his shoulders. Written by Hideaki Anno, Neon Genesis Evangelion is a heroic tale of a young boy who will become a legend. But as this psychological drama unfolds, ancient secrets beneath the big picture begin to bubble to the surface...