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Feudal Japan — a time of danger, intrigue and deception. Jubei is a masterless ninja who travels the land alone, hiring his services to those with gold... or a worthy cause. His fearsome abilities have served him well, but a hideous plot to overthrow the government threatens to end his wandering ways and possibly his life.When a small village succumbs to a terrible plague, a team of ninjas are sent to investigate, and realize that all is not as it seems. Ambushed, they are wiped out by a fearsome man-monster with incredible powers, leaving only one alive — Kagero, a beautiful female ninja, whose touch can bring instant death. Jubei saves her from a fate worse than death, and unwittingly becomes drawn into the web of treachery. He is soon faced with his greatest challenge, an enemy for whom death holds no fear, with the power to destroy Jubei's world.

Fourteen years after defeating the immortal warrior Himuro Genma and thwarting the Shogun of the Dark’s evil plans, Kibagami Jubei continues to roam all over Japan as a masterless swordsman. During his journey, he meets Shigure, a priestess who has never seen the world outside her village. But when a group of demons destroys the village and kills everyone, Jubei becomes a prime target after acquiring the Dragon Jewel – a stone with an unknown origin. Meanwhile, Shigure – along with the monk Dakuan and a young thief named Tsubute – travels to the village of Yagyu. And with two demon clans now hunting down Shigure, Dakuan must once again acquire the services of Jubei to protect the Priestess of Light.